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Best ETL architecture on AWS to get large csv data files from s3, clean data using Pandas or Pyspark, into postgres DB
By Guest on 16th December 2022 11:04:16 PM | Syntax: PYTHON | Views: 184



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  1. Best ETL architecture on AWS to get large csv data files from s3 with 1000 columns and clean the data, and filter the data to only include a set of 30 columns, and then import the data into a postgres database. Show a solution using pandas or pyspark.
  2.  
  3. There are a few different approaches you can take to ETL (extract, transform, and load) large CSV data files from Amazon S3 and import them into a PostgreSQL database using AWS services. Here is one potential solution using either Pandas or PySpark:
  4.  
  5. Extract the data from S3: You can use the boto3 library to connect to S3 and read the data directly into a Pandas dataframe or a Spark DataFrame. For example:
  6.  
  7.  
  8. import boto3
  9.  
  10. # Connect to S3 and read the data into a Pandas dataframe
  11. s3 = boto3.client('s3')
  12. obj = s3.get_object(Bucket='my-bucket', Key='data.csv')
  13. df = pd.read_csv(obj['Body'])
  14.  
  15. # OR, if using PySpark:
  16. spark = pyspark.sql.SparkSession.builder.getOrCreate()
  17. df = spark.read.csv('s3://my-bucket/data.csv', header=True)
  18.  
  19.  
  20. Clean and filter the data: Once you have the data in a Pandas or Spark DataFrame, you can use the various data manipulation and transformation functions to clean and filter the data as needed. For example:
  21.  
  22.  
  23. # Drop any rows with null values
  24. df = df.dropna()
  25.  
  26. # Select only the columns we want to keep
  27. df = df[['col1', 'col2', 'col3', ...]]
  28.  
  29. # Perform any other transformations or cleaning steps as needed
  30.  
  31.  
  32.  
  33. Load the data into PostgreSQL: To load the data into a PostgreSQL database, you can use the psycopg2 library to connect to the database and write the data directly from the Pandas or Spark DataFrame. For example:
  34.  
  35.  
  36. import psycopg2
  37.  
  38. # Connect to the database
  39. conn = psycopg2.connect(host='my-database.abc123.us-east-1.rds.amazonaws.com',
  40.                         user='myuser', password='mypassword',
  41.                         dbname='mydatabase')
  42.  
  43. # Write the data to the database
  44. df.to_sql('table_name', conn, if_exists='replace')
  45.  
  46. # OR, if using PySpark:
  47. df.write.jdbc(url='jdbc:postgresql://my-database.abc123.us-east-1.rds.amazonaws.com/mydatabase',
  48.               table='table_name', mode='overwrite', properties={'user': 'myuser', 'password': 'mypassword'})
  49.  
  50. # Close the connection
  51. conn.close()
  52.  
  53.  
  54.  
  55.  
  56. This is just one example of an ETL pipeline for handling large CSV data files on AWS. There are many other approaches you could take depending on your specific needs and constraints.














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